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Vulnerability record · CVE-2018-13843 · published 10 July 2018

CVE-2018-13843: Htslib vulnerability

HHtslib · Htslib

An issue has been found in HTSlib 1.8. It is a memory leak in bgzf_getline in bgzf.c. NOTE: the software maintainer's position is that the "failure to free memory" can be fixed in applications that use the HTSlib library (such as test/test_bgzf.c in the original report) and is not a library issue

7.5 CVSS 3.0 High EPSS 1.5% · top 27.2% CWE-772 · CWE-772
7.5CVSS 3.0 base score, v2 5.0
1.5%EPSS exploitation probability, 30 days
NoNot in CISA KEV
1Affected product versions listed by NVD
2References, 2 tagged exploit
17 Jun 2026Last modified by NVD

Description

An issue has been found in HTSlib 1.8. It is a memory leak in bgzf_getline in bgzf.c. NOTE: the software maintainer's position is that the "failure to free memory" can be fixed in applications that use the HTSlib library (such as test/test_bgzf.c in the original report) and is not a library issue

CVSS:3.0/AV:N/AC:L/PR:N/UI:N/S:U/C:N/I:N/A:H

Affected products

1 vulnerable configurations from NVD's CPE data, grouped by vendor and product.

References

LinkTags
https://github.com/samtools/htslib/issues/731#issue-339662537 ExploitPatchThird Party Advisory
https://github.com/samtools/htslib/issues/731#issue-339662537 ExploitPatchThird Party Advisory

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Related vulnerabilities

Same products first, then exploited flaws of the same weakness class.

9.8CVE-2018-13845Htslib out-of-bounds read vulnerabilityAn issue has been found in HTSlib 1.8. It is a buffer over-read in sam_parse1 in sam.c.EPSS 1.6%9.8CVE-2017-1000206Htslib memory buffer overflow vulnerabilitysamtools htslib library version 1.4.0 and earlier is vulnerable to buffer overflow in the CRAM rANS codec resulting in potential arbitrary code execu…EPSS 2.0%8.8CVE-2026-31968Htslib stack-based buffer overflow vulnerabilityHTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a…EPSS 0.52%8.8CVE-2026-31963Htslib heap-based buffer overflow vulnerabilityHTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data. As one…EPSS 0.52%8.8CVE-2026-31962Htslib heap-based buffer overflow vulnerabilityHTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data. While …EPSS 0.59%8.8CVE-2020-36403Htslib out-of-bounds write vulnerabilityHTSlib through 1.10.2 allows out-of-bounds write access in vcf_parse_format (called from vcf_parse and vcf_read).EPSS 1.6%7.5CVE-2018-13844Htslib memory leak vulnerabilityAn issue has been found in HTSlib 1.8. It is a memory leak in fai_read in faidx.c. NOTE: This has been disputed with the assertion that this vulnerab…EPSS 1.4%7.1CVE-2026-31971Htslib stack-based buffer overflow vulnerabilityHTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a…EPSS 0.52%

Source: NIST National Vulnerability Database (record CVE-2018-13843), CISA KEV, FIRST EPSS (scores of 2026-09-27). This page is refreshed as NVD updates the record.